Med2RDF

The Med2RDF project develops converters and provides RDF data of biomedical databases.

Project resources

• This Web site and the GitHub Pages source contents
  • See instructions for the online editor, Jekyll and Markdown
• GitHub repository
• Google groups
• Google drive

Biomedical databases

Currently we are working on the following databases:

• dbSNP
• dbVar
• dbNSFP
• ExAC
• gnomAD
• ClinVar
• DGIdb
• COSMIC
• CIViC
• HiNT
• INstruct
• HGNC

etc.

RDF data models

• Ontologies for above biomedical databases (Med2RDF ontology)
  • Ontology commonly used among databases
  • Ontology specific to each database
• Human chromosome ontology (HCO)
• Standardization of variation representation (VISC)
  • Genome Variation Ontology (GVO)