Med2RDF
The Med2RDF project develops converters and provides RDF data of biomedical databases.
Project resources
- This Web site and the GitHub Pages source contents
- See instructions for the online editor, Jekyll and Markdown
- GitHub repository
- Google groups
- Google drive
Biomedical databases
Currently we are working on the following databases:
- dbSNP
- dbVar
- dbNSFP
- ExAC
- gnomAD
- ClinVar
- DGIdb
- COSMIC
- CIViC
- HiNT
- INstruct
- HGNC
etc.
RDF data models
- Ontologies for above biomedical databases (Med2RDF ontology)
- Ontology commonly used among databases
- Ontology specific to each database
- Human chromosome ontology (HCO)
- Standardization of variation representation (VISC)
- Genome Variation Ontology (GVO)